RnoEX0012779 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2593674-2597667:+
Coord C1 exon
chr6:2593674-2593808
Coord A exon
chr6:2594048-2594152
Coord C2 exon
chr6:2597617-2597667
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAAACTTAACAAATCCCTAGGTG
3' ss Score
5.41
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATTCGCAAAGCTGGATTGGTGGAAGCAATGAGCCGTTGACTGGCTTTACATGGCGAGGTGGTTGTGAAAGAGAAACAACAGGCATACAAGTTTGGAATGAAGTGTTTGTGATCGACAGACCTAATGGAACAAAA
Seq A exon
GTGGCTGTGCTGCTAATGGATACCCAGGGTGCCTTTGATAGCCAGTCAACCATTAAAGACTGTGCGACGGTGTTTGCTCTGAGCACCATGACCAGCTCTGTCCAG
Seq C2 exon
GTATATAATTTGTCTCAGAATATTCAAGAAGATGATCTTCAACACTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523-'9-4,'9-2,11-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(16.2=100)
A:
PF0226314=GBP=FE(12.5=100)
C2:
PF0226314=GBP=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]