BtaEX6043580 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016167 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:20693629-20695743:-
Coord C1 exon
chr11:20695687-20695743
Coord A exon
chr11:20694698-20694769
Coord C2 exon
chr11:20693629-20694060
Length
72 bp
Sequences
Splice sites
3' ss Seq
CATTTTATTTTATTTTTTAGGCA
3' ss Score
10.34
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCTTACATTAAAATTTATCAAGGAGAGGAACTTCCACATCCAAAGTCCATGCTTCAG
Seq A exon
GCAACAGCTGAAGCTAATAATCTTGCTGCAGTAGCAGGAGCAAGAGAGATCTATTGCAAAAGTATGGAGCAG
Seq C2 exon
GTATGCGGTGGGGACAAGCCTTACATTGCACCTTCAGATCTGGAGCGAAAACACCTGGATCTTAAGGAAGTGGCGATTAAACAGTTTCGTTCAGTGAAAAAAATGGGTGGAGATGAATTCTGCCGTCGTTATCAGGACCAGCTTGAGGCTGAAATTGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGTACCCCTGCCACACTGTTTGCGGTCATGTTTGCTATGTATATAATCTCAGGACTGACTGGCTTCGTTGGCCTAAACTCTATAGCCGTCTTGTGTAACCTTGTCATGGGGTTAGCACTGACGTCTCTTTGTACTTGGGCATATGTTAAATACTCTGGGGAGTTCAGAGAAATTGGAACAATGATCGATCAGATTGCTGAAACACTATGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016167-'17-16,'17-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(13.7=100)
A:
PF028419=GBP_C=FE(17.6=100)
C2:
PF028419=GBP_C=PD(55.0=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATCCAAAGTCCATGCT
R:
AAGCTGGTCCTGATAACGACG
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]