Special

MmuEX0006700 @ mm10

Exon Skipping

Gene
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:79852525-79854610:-
Coord C1 exon
chr17:79854554-79854610
Coord A exon
chr17:79853834-79853905
Coord C2 exon
chr17:79852525-79852956
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATATATATTTTATCTTTTAGGCA
3' ss Score
9.66
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GCATACATTAAAATATATCAAGGAGAGGAACTACCACACCCAAAGTCTATGCTTCAG
Seq A exon
GCAACAGCTGAGGCTAATAACCTGGCAGCAGTAGCAGGAGCAAGAGATGTCTATTGTAAAAGTATGGAGCAG
Seq C2 exon
GTATGCGGTGGTGATAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGAGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTTATAAAGCACAATGATGGCAAAAATATCTTCTATGCTGCTCGCACCCCTGCCACACTGTTTGCAGTCATGTTTGCTATGTATATCATCTCAGGACTGACTGGCTTCATTGGCCTAAACTCTATAGCTGTCTTATGCAACCTCGTCATGGGGCTAGCACTGACGTCCCTTTGTACTTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATCGGAACAATGATTGATCAGATTGCTGAAACACTGTGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.167 A=0.021 C2=0.000
Domain overlap (PFAM):

C1:
PF028419=GBP_C=FE(13.7=100)
A:
PF028419=GBP_C=FE(17.6=100)
C2:
PF028419=GBP_C=PD(55.0=50.0)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGAACTACCACACCCA
R:
CCTGATAACGGCGGCAGAATT
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types