DreEX0015572 @ danRer10
Exon Skipping
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7953131-7955188:-
Coord C1 exon
chr13:7955132-7955188
Coord A exon
chr13:7953914-7953985
Coord C2 exon
chr13:7953131-7953562
Length
72 bp
Sequences
Splice sites
3' ss Seq
GTTTGAACTCTATTACTCAGGCA
3' ss Score
3.95
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GCATATATCAAAATCTACCAAGGGGAGGAGCTTCCACATCCTAAATCCATGTTGCAG
Seq A exon
GCAACTGCTGAAGCGAACAATCTGACAGCTGTCGCTGGAGCAAAAGACACTTATAACAGAACCATGGAGCAG
Seq C2 exon
GTGTGTGGAGGAAACAAACCATACATCGCCCCAGTTGACCTTCAGCGCTATCATGATGAGTTTAAGAAAACCTCAGTCGATCAGTTTCGCGGGGTGAAGAAAATGGGCGGTGTAGAGTTCTGTCATCGCTATCAGGAGCAGTTAGAGACAGAGCTCGATGAAGTGTACACAAATTTCGTGAAACACAATGAAAGCAAGAACATTTTCTATGCAGCAAGAACTCCGGCCACCCTGTTTGCAGTCATGTTTGTCACCTACATGGTCTCCACCGTAACTGGATTTATTGGCTTATCATTCATCGCTGCTCTGGCCAGTGTGGTGATGGGGGTAACTCTGCTGTCGCTGTGTGCCTGGTCATATGTCAGATACTCAGGAGAGTATCGAGAAGTGGGAGTGACTATAGACCTAATAGCAGAGGCCCTGTGGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(13.0=100)
A:
PF028419=GBP_C=FE(16.7=100)
C2:
PF028419=GBP_C=PD(57.2=54.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACCAAGGGGAGGAGCTTC
R:
ACAGAACTCTACACCGCCCAT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]