RnoEX6027430 @ rn6
Exon Skipping
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2604640-2607022:+
Coord C1 exon
chr6:2604640-2604696
Coord A exon
chr6:2605527-2605598
Coord C2 exon
chr6:2606591-2607022
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTACTTTCTTTTAGGCA
3' ss Score
10.67
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCATACATTAAAATATATCAAGGAGAGGAACTACCACATCCAAAATCTATGCTTCAG
Seq A exon
GCAACAGCTGAGGCTAATAACCTGGCAGCAGTAGCGGGAGCAAGGGATGCCTACTGTAGAAGTATGGAGCAG
Seq C2 exon
GTATGTGGTGGCGACAAGCCGTACATTGCACCTTCAGATTTGGAGCGAAAACACCTGGATCTCAAGGAAGTGGCGCTCAAACAGTTTCGTTCTGTGAAAAAAATGGGTGGTGATGAATTCTGCCGCCGTTATCAGGACCAGCTTGAAGCTGAAATCGAAGAAACCTATGCAAATTTCATAAAGCACAATGATGGCAAAAACATCTTCTATGCTGCTCGCACCCCCGCCACACTGTTCGCAGTCATGTTTGCTATGTACATAATCTCAGGACTGACCGGCTTCATCGGCCTGAACTCTATAGCTGTCTTATGCAACCTTGTCATGGGGCTGGCACTGACCTCCCTGTGTACGTGGGCATATGTTAAGTACTCTGGGGAGTTCAGAGAAATTGGAACAATGATTGATCAGGTTGCTGAAACACTATGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523-'19-16,'19-14,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(13.7=100)
A:
PF028419=GBP_C=FE(17.6=100)
C2:
PF028419=GBP_C=PD(55.0=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGGAACTACCACATCCA
R:
CCTGATAACGGCGGCAGAATT
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]