GgaEX1009731 @ galGal4
Exon Skipping
Gene
ENSGALG00000008515 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr3:15774363-15778572:-
Coord C1 exon
chr3:15778516-15778572
Coord A exon
chr3:15777293-15777364
Coord C2 exon
chr3:15774363-15774794
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTCAATGTTTTCCAGGCA
3' ss Score
7.7
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCTTACATTAAAATCTATCAAGGAGAGGAGCTACCTCATCCAAAGTCTATGCTGCAG
Seq A exon
GCAACAGCTGAGGCAAACAATCTTGCTGCTGTGGCAGGAGCAAAAGACTTGTACAGTAAAGGCATGGAGCAG
Seq C2 exon
ATTTGTGGAGGAGATAAGCCTTATATTGCCCCATCGGACCTTGAGCGAAAGCACCAGGATTTCAAAGAGTCAGCTGTCAAGCAGTTCTGCTCTGTGAAGAAGATGGGAGGGGAGGAGTTCTGTCGGCGCTACCAGGAACAGCTTGAGGCAGAAATCGACGAGATCTATGCAAACTTTGTGAAGCACAATGATGGCAAAAACATATTTTACGCTGCTCGTACCCCTGCCACTCTATTTGCAGTCATGTTTGCCATGTATATAATCTCAGGACTGACTGGGTTCCTTGGTATGAACTCCATAGCTACCCTGTGTAATCTCGTGCTGGGGATGGCTCTTATATCCTTTTGTACTTGGGCATACGTTAAGTACTCTGGGGAATTCAGAGAAGTTGGAACAGCCATCGATCAGATCGCTGAAGCTATATGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.0=100)
A:
PF028419=GBP_C=FE(17.8=100)
C2:
PF028419=GBP_C=PD(54.3=48.6)
Main Skipping Isoform:
ENSGALT00000013868fB5247
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCCAAAGTCTATGCTGC
R:
CTCAAGCTGTTCCTGGTAGCG
Band lengths:
172-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]