BtaEX6044951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68697624-68700537:+
Coord C1 exon
chr11:68697624-68697698
Coord A exon
chr11:68698875-68699038
Coord C2 exon
chr11:68700374-68700537
Length
164 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATTGTCTGCACAGGAT
3' ss Score
8.56
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTCGAGTATGTGGGACCTACTGAGCCCCAAGGAGAAGATTCTGCTGCTGAGAAAAGATGATGATGGAGAATTCTG
Seq A exon
GATGTCACTGCAGGACTTTAAAGCACATTTCATGCTTCTGGTCATCTGTAAACTGAGCCCAGGCCTGCTGACTCAGGAGGTGGGCCAGAAGTGGTCGTACACCATGCTGGAGGGGAGATGGGAGAATGGGAGGACTGCTGGTGGCCAGATGAAGTCGCCCCAAG
Seq C2 exon
ACACATTTTGGAAGAACCCACAGTTCCTGCTGTCAGTCTGGAGGCCCCAGGAGGGCAAGAGGTCCCAGTTGCTCTGCAGCGTGCTGGTATCCCTGCTCCAGAAGCCCAGACACAGGCACCGCAACTGGAAGCCTCACCTCGCCATTGGCTTCTACCTCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.5=100)
A:
PF0064816=Peptidase_C2=PD(6.5=33.9),PF0106717=Calpain_III=PU(16.4=44.6)
C2:
PF0106717=Calpain_III=FE(35.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGTGGGACCTACTGAGCC
R:
CCTGAAGAGGTAGAAGCCAATGG
Band lengths:
235-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]