BtaEX6046003 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94052421-94058169:-
Coord C1 exon
chr11:94057939-94058169
Coord A exon
chr11:94055255-94055372
Coord C2 exon
chr11:94052421-94052654
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCATTCTTTTTTGTTTTTAGGTA
3' ss Score
12.26
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATGCCTGTGCAGGCAGCTCAATGGACAGAATTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGAACGTGCACAAACCCATCAGTTTAGGTTGTTCACACACTGTTTGTAAGACCTGCTTGAATAAACTTCACCGAAAAGCTTGTCCTTTTGACCAGACTGCCATCAACACAGACATTGATGTGCTTCCTGTCAACTTCGCACTTCTCCAGTTAGTTGGAGCCCAG
Seq A exon
GTACCAGATCATCAGTCAGTAAAGTTAAGTAATTTAGGTGAGAACAAACACTATGAGGTTGCAAAGAAATGTGTTGAAGATTTGGCGCTCTACTTAAAACCACTAAGTGGAGGTAAAG
Seq C2 exon
GTGTAGCTAGTTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTAGTGACACTTGTAAACTGTCAGCTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATACGCGCAGCCCGTTCACTTGGAGAAAGGACTGTAACGGAGCTAATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAACCTATGGGCTGCTGTCAGGGCTCGAGGATGCCAGTTTCTAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146341=zf-RING_5=WD(100=55.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGCACAAACCCATCAGTT
R:
TTCTTCCTCCACCAGCTGACA
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]