MmuEX0039254 @ mm10
Exon Skipping
Gene
ENSMUSG00000075376 | Rc3h2
Description
ring finger and CCCH-type zinc finger domains 2 [Source:MGI Symbol;Acc:MGI:2442789]
Coordinates
chr2:37409434-37414812:-
Coord C1 exon
chr2:37414516-37414812
Coord A exon
chr2:37411140-37411257
Coord C2 exon
chr2:37409434-37409667
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTCTGCATATTTTTTTGTAGGTA
3' ss Score
9.63
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTTAAAAAACACTACACATCAAAATAATGATCTGCTAGACTGCTAACCCGAGCATCAGCTTCCACAATGCCTGTGCAGGCAGCTCAATGGACAGAGTTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGAATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACAGTTTGCAAGACCTGCTTGAATAAACTTCACCGAAAAGCGTGTCCTTTTGACCAGACTGCCATAAACACAGACATTGATGTGCTCCCTGTCAACTTTGCACTTCTTCAGTTAGTTGGAGCCCAG
Seq A exon
GTACCAGATCATCAGTCAATAAAGTTAAGTAATCTAGGTGAGAATAAACACTATGAAGTGGCAAAAAAATGCGTAGAGGACTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAG
Seq C2 exon
GTGTAGCTAGTTTGAACCAGAGTGCCCTGAGCCGTCCAATGCAAAGGAAACTAGTTACACTTGTAAACTGTCAACTGGTGGAAGAAGAAGGTCGTGTCAGAGCTATGCGAGCGGCCCGTTCACTAGGAGAAAGAACTGTGACAGAACTGATACTGCAGCACCAGAACCCTCAGCAGCTGTCTGCCAACCTGTGGGCTGCTGTCAGGGCTCGAGGATGCCAGTTTCTAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075376_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146341=zf-RING_5=WD(100=55.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTCCTTTTGACCAGACT
R:
GGGTTCTGGTGCTGCAGTATC
Band lengths:
256-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types