GgaEX1048716 @ galGal3
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
NA
Coordinates
chr17:9505587-9507995:-
Coord C1 exon
chr17:9507788-9507995
Coord A exon
chr17:9506273-9506390
Coord C2 exon
chr17:9505587-9505820
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTTGCATTTTTTAGGTA
3' ss Score
11.15
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GACAGAATTTCTGTCCTGCCCAATCTGCTACAACGAGTTTGATGAGAATGTGCACAAACCCATCAGCTTAGGTTGCTCTCACACTGTCTGTAAGACCTGCCTGAACAAGCTTCATCGCAAGGCATGTCCTTTCGACCAGACTGCCATCAATACAGACATCGATGTGCTTCCTGTAAACTTTGCACTCCTCCAGTTAGTTGGAGCCCAG
Seq A exon
GTACCTGATCATCAGACAGTAAAGTTGAGTAATGTAGGAGAGAACAAACATTATGAAGTAGCAAAGAAATGTGTTGAGGATTTAGCACTCTACTTAAAGCCATTAAGTGGAGGAAAAG
Seq C2 exon
GTGTTGCTAGCTTGAATCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAGCTTGTGACACTGGTGAATTGTCAGCTGGTAGAGGAAGAGGGTCGAGTTAGAGCTATGAGAGCAGCTCGATCACTGGGCGAGAGAACTGTTACAGAATTGATCTTGCAGCACCAAAATCCTCAGCAGCTTTCTGCCAATCTTTGGGCTGCTGTCAGGGCACGAGGATGTCAGTTTCTAGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146341=zf-RING_5=WD(100=62.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCCTGAACAAGCTTCA
R:
ACAGTTCTCTCGCCCAGTGAT
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]