DreEX6087237 @ danRer10
Exon Skipping
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9767955-9774470:+
Coord C1 exon
chr10:9767955-9768258
Coord A exon
chr10:9771130-9771247
Coord C2 exon
chr10:9774237-9774470
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTCCATTTTATTTCTGCAGGTT
3' ss Score
11.69
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTGTTTAAGGCACCAGGGCGTGGAAGTATGCGATCTACCTGAGCGAGATTGTTCCACCTGTAGGTCACAGGATGCCGGTGCAGGCAGCTCAATGGACCGAGTTTTTATCCTGCCCTATCTGCTATAATGAGTTTGATGCCTGCAGCCACAAGCCAATCAGCCTCGGCTGCTCGCACACCGTCTGCAAGACCTGCCTCCACAAACTGCACCGCAAGGCCTGTCCTTTTGACCAGACGGCTATCAGCACTGACATTGATGTGCTGCCTGTCAACTGTGCCCTCCTGCAGCTGGTGGGGGTGCCG
Seq A exon
GTTCCTGAGGGAGAGGTTGTGAGTGTGGGCAATGCTGAAGACACGAGACATTATGAAGTGTGCAGGATGTGTGTGGAGGAGCTGGCGCTGTACCTCAAACCAGTCAGTGGAGGAAAAG
Seq C2 exon
GTGTAATGTCGGCGAGTTCAAGTGCTCTCAGTCGGCCCATGCAGAGGAAGCTGGTGACGCTGGTGAACTGTCAGCTGGTGGAGGAAGAGGGCCGCGTGCGGGCGGTGCGGGCCTGCAGGTCTCTGGGTGAACGAACCGTCACTGAGCTCATCCTGCAGCACCAGAACCCACAGCAGCTCTCTGCAAACCTGTGGGCTGCAGTAAGGGCACGCGGGTGCCAGTTCCTTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136316=FYVE=PU(70.2=94.8),PF136391=zf-RING_2=WD(100=54.5)
A:
PF0136316=FYVE=PD(27.9=72.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTGCTGCCTGTCAACTG
R:
TTACTGCAGCCCACAGGTTTG
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]