BtaEX6046008 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94026235-94036780:-
Coord C1 exon
chr11:94036662-94036780
Coord A exon
chr11:94035301-94035413
Coord C2 exon
chr11:94026235-94026543
Length
113 bp
Sequences
Splice sites
3' ss Seq
TACTGATTTTCTTTTTGTAGCCT
3' ss Score
7.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATGCTGTTTCACCAACTTGGGAGCAGCTAGAAAATGCAATGGTAGCTGTTAAAACAGTGGTTCATGGCCTAGTAGACTTCATACAAAATTATAGTAGAAAAGGCCATGAGACACCTCAG
Seq A exon
CCTCAGCCAAACAGCAAATACAAGACCAGCATGTGTCGAGATTTGCGACAGCAAGGAGGGTGTCCACGAGGAACAAATTGTACTTTTGCCCATTCTCAGGAAGAGCTTGAAAA
Seq C2 exon
GTATCGATTAAGGAACAAAAAGATCAATGCAACTGTAAGAACGTTTCCTCTTCTAAATAAAGTTGGTGTAAACAACACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACGGGGAAAATTGTTCCAAGTACAAATGGAATTTCAAATGCAGAAAACAGTGTTTCCCAGCTAATTCCACGTAGTACTGACAGTACATTAAGAGCTCTGGAGACTGTGAAGAAAGTGGGGAAGGTTGGCACCAATGGTCAGAATGCTGCTGGGCCTTCTGTAGAGTCTGTAACTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867-'8-11,'8-8,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.737 C2=0.702
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=FE(25.5=100)
A:
PF0028516=Citrate_synt=PD(18.3=73.7),PF0064219=zf-CCCH=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACTTGGGAGCAGCTAG
R:
CCCCGTTGTTTCAGTACTTCCT
Band lengths:
246-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]