GgaEX6015571 @ galGal3
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
NA
Coordinates
chr17:9501940-9503425:-
Coord C1 exon
chr17:9503307-9503425
Coord A exon
chr17:9502850-9502962
Coord C2 exon
chr17:9501940-9502248
Length
113 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTGGTTTTTTTTAAGCCA
3' ss Score
5.66
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATGCAGCATCTCCAACATGGGAGCAGCTGGAAAATGCAATGGTGGCTGTAAAGACGGTGGTACATGGGCTGGTGGATTTCATTCAAAATTACAGTAGAAAAGGCCACGAAACTCCACAG
Seq A exon
CCACAACCAAATAGCAAATACAAAACAAGTATGTGCCGAGACCTTCGACAGCAAGGGGGATGTCCAAGAGGAACCAACTGTACGTTCGCTCATTCTCAGGAAGAGCTTGAAAA
Seq C2 exon
ATATCGCTTGAGGAACAAAAAAATCAGTGCAACAGTGAGAACATTCCCCCTTCTAAATAAAGTTGGCGTTAATAGCACCGTCTCAACCACTACAGGAAGCGTAATTTCTGTCATAGGAAGCCCTGAAGCAACAGTGAAGATGGTGCCAAGTACTAATGGAATAGCTAATTTAGAAAGTGGTGTTCCCCAATTGATCCCTCGCTGTGCAGACACCTCCCTAAGAGCTTTGGAGAACACCAAGAAGGCAGGGAAGAGTGGAGCCAATGGCCAGAATGTTTCTGGATCCCCTACAGAATCACTACCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.658 C2=0.635
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=FE(25.5=100)
A:
PF0028516=Citrate_synt=PD(18.3=73.7),PF0064219=zf-CCCH=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCATCTCCAACATGGG
R:
CTTCACTGTTGCTTCAGGGCT
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]