RnoEX0074851 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21641730-21652725:-
Coord C1 exon
chr3:21652607-21652725
Coord A exon
chr3:21651137-21651249
Coord C2 exon
chr3:21641730-21642035
Length
113 bp
Sequences
Splice sites
3' ss Seq
TAAATGTTTTGTTTGTGTAGCCA
3' ss Score
5.59
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATGCTGTTTCACCAACTTGGGAGCAACTGGAAAATGCAATGGTAGCTGTTAAAACAGTGGTTCATGGTCTTGTGGACTTCATACAAAATTATAGTAGGAAAGGTCATGAGACACCCCAG
Seq A exon
CCACAGCCAAACAGCAAGTATAAAACTAGTATGTGCCGAGATTTACGACAACAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAA
Seq C2 exon
GTACCGATTAAGGAACAAAAAGATGAGCGCGACTGTAAGAACATTTCCTCTTCTGAATAAAGTTGCTGTAAACAGCACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACTGGGAAAATTGTTCCAAGTACAAATGGAATTTCAAATACAGAAAGCAGTGTTTCCCAGCTAATCCCACGAAGTGCTGACAGTGCAGGAAGGACTTTGGAGACTGTGAAGAAAGTTGGGAAAGTTGGCACTAATGGTCAGAATGCTGGGCCCTCTGCAGAGTCTGTGTCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=0.789 C2=0.728
Domain overlap (PFAM):
C1:
PF0028516=Citrate_synt=FE(25.5=100)
A:
PF0028516=Citrate_synt=PD(18.3=73.7),PF0064219=zf-CCCH=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGTCATGAGACACCCC
R:
CTTCCTGCACTGTCAGCACTT
Band lengths:
245-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]