DreEX0061449 @ danRer10
Exon Skipping
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9784684-9793479:+
Coord C1 exon
chr10:9784684-9784802
Coord A exon
chr10:9788152-9788264
Coord C2 exon
chr10:9793237-9793479
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTGTCTGCTTTCTTGTTCAGGCT
3' ss Score
10.1
5' ss Seq
GAAGTGAGA
5' ss Score
3.22
Exon sequences
Seq C1 exon
ATGCAGCTGCTCCATCTTGGCCAGAGCTTGAGAGTGTGTTACTAGCCGTGAAGGTTGTTGTCCATGGGCTTGTGGAGTTCATCCAAAATTTTAGCAAAAAGAGCAATGAAAGCCCTCAG
Seq A exon
GCTCAACCCAACAGCAAGTACAAAACAAGTATGTGCAGGGACTTACGGCAGCAAGGCGGCTGCCCGAGAGGAGCCAGCTGTACATTTGCCCACACGCAAGAGGAGTTGGAGAA
Seq C2 exon
GCACAGAATGAGAAATAGGAAAGCTAGTGGGGCGGTGAGGCCGTTTCTGTCAGTTCCAGCAGTGATGGCCAAATCTTGCACCAAGGCAGGGTCAGAGGTAGGCCCCGGAGGGATAAAGAACCATGAGAAAGATGCCTCAGAGGACGTGTCTCCAACTCAGCTCATCCCTAGAGGAGGAGACCAGCAGGAGGACAAAATGCTGCTCAGTGGTGTTAACGGATTGCATGTGACCAGCCTAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.868 C2=0.841
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTGGCCAGAGCTTGAG
R:
ACACGTCCTCTGAGGCATCTT
Band lengths:
257-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]