BtaEX6046044 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94292195-94297475:-
Coord C1 exon
chr11:94297317-94297475
Coord A exon
chr11:94292546-94292680
Coord C2 exon
chr11:94292195-94292335
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGATTGAACCTCCTTTTAGGTA
3' ss Score
9.08
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTACTGCAGGCAATGGGATACCCAACGGGCTTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAGTCAGATAACGAAGGCAAAAATGAAACAGTGTCTTCAAACTCAAGCAATAATACTGGAAATTCTACAACTGAAACCTCCAGTACCTTAGAG
Seq A exon
GTAAGAACTCAGGGCCCTATCCTCACAGCAAGTGGCAAAAATCCTGTAATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTACGAACTCATCTCGGAGACTGGTGGAAGCCATGACAAACGCTTTGTGATGGAG
Seq C2 exon
GTAGAAGTGGATGGACAAAAATTCAGAGGTGCAGGTCCAAATAAGAAAGTGGCAAAGGCAAGTGCAGCTTTAGCTGCCCTGGAGAAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATTATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921-'32-27,'32-26,33-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=0.741 C2=0.369
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.3=7.5)
A:
PF0003520=dsrm=PU(50.8=71.1)
C2:
PF0003520=dsrm=PD(46.0=61.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACGGGCTTTGATGCAGAT
R:
TGCTGCATTGGGTCCAGAAAA
Band lengths:
249-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]