MmuEX6100933 @ mm9
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37452224-37456423:-
Coord C1 exon
chr2:37456265-37456423
Coord A exon
chr2:37454641-37454775
Coord C2 exon
chr2:37452224-37452364
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCTGTCCCTTTTAGGTA
3' ss Score
12.83
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATCAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTCTACAACTGAGACCTCCAGTACCTTAGAG
Seq A exon
GTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAATATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAG
Seq C2 exon
GTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCACTAGCTGCCCTGGAGAAGCTGTTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGAAGATCATTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.711 C2=0.298
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.3=7.5)
A:
PF0003520=dsrm=PU(50.8=71.1)
C2:
PF0003520=dsrm=PD(46.0=61.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACAGGTTTTGATGCAGA
R:
TTATTTGCCGCATTGGGTCCA
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: