RnoEX0087154 @ rn6
Exon Skipping
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21844719-21852723:-
Coord C1 exon
chr3:21852565-21852723
Coord A exon
chr3:21850499-21850633
Coord C2 exon
chr3:21844719-21844859
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCCTGTCCTTTTTAGGTA
3' ss Score
13
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAG
Seq A exon
GTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAG
Seq C2 exon
GTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAAAAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATCATTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150-'28-28,'28-25,31-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=0.678 C2=0.327
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.3=7.5)
A:
PF0003520=dsrm=PU(50.8=71.1)
C2:
PF0003520=dsrm=PD(46.0=61.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACAGGTTTTGATGCAGA
R:
TGCTGCATTGGGTCCAGAAAA
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]