DreEX0076147 @ danRer10
Exon Skipping
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9888325-9890803:-
Coord C1 exon
chr10:9890651-9890803
Coord A exon
chr10:9888730-9888864
Coord C2 exon
chr10:9888325-9888465
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATAGCATGTTCTTTATCCAGGTA
3' ss Score
7.04
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
Exon sequences
Seq C1 exon
GTGCTGCAGGCGATGGGTTACCCTACTGGCTTCGACACAGACCTGGACTCCATGAGTGCAGATGAGAAGTCAGATGGCGAGGGAAAGAGTGAATCCTCCACACACTCAAGCAATAACACAACACACTCCTCAGACAGCTCCAACACATTGGAG
Seq A exon
GTACGAACTCAGGGTCCTATTTTGACGGCCAGCGGGAAGAACCCAGTCATGGAGCTGAATGAGAAGCGGCGCGGCCTGAAATACGAGCTCATCTCAGAGAGTGGAGGAAGTCACGACAAACGCTTCGTCATGGAG
Seq C2 exon
GTGGAAGTGGATGGACAGAAGTTTCGCGGTGCAGGGCCCAATAAGAAAGTAGCCAAAGCCAGCGCTGCCCTTGCAGCTCTAGAGAAACTCTTCTCCGGGCCGAATGCTGCTGGCAACAAGAAGAAGAAAATAATCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.711 C2=0.355
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.8)
A:
PF0003520=dsrm=PU(50.8=71.1)
C2:
PF0003520=dsrm=PD(46.0=61.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGCTTCGACACAGACCT
R:
CTTCTTCTTGTTGCCAGCAGC
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]