BtaEX6046051 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94518109-94520598:+
Coord C1 exon
chr11:94518109-94518274
Coord A exon
chr11:94518861-94519644
Coord C2 exon
chr11:94520482-94520598
Length
784 bp
Sequences
Splice sites
3' ss Seq
GACGCTCTCTCCCCTCGCAGGTG
3' ss Score
12.75
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTGAGCCCTGTCTCAATGGTGGGACTTGCCTCGTCACCTGGAATGACTTCCACTGCACCTGCCCTGCCAACTTCACTGGGCCCACGTGTGCCCAGCAGCTGTGGTGTCCTGGCCAGCCCTGTCTCCCGCCTGCCACCTGTGAGGAGGTCCCTGATGGCTTTGTCT
Seq A exon
GTGTGGCGGAGGCCACGTTCCGCGAGGGACCCCCGGCGGAATTCAGCGGGCACAACGCGTCATCGGGCAGCGCTCTCAGCGGCCTCTCGCTGGTCTTCCGCACTCGCGACCCCGAGGCAGGGCTGTTGCGCGCTGAGGACGGCCCGGCCGCCGTGTGGCTGGCGGTGCGCAACGGCTCGCTGGCGGCCGGCGTGCGCAGCGGCGCCGGTTTGCCCCGCGCGGTGCTGCCAGCGCCCGGGCCGCGTGTGGCCGACGGCGCCTGGCACCGCGTGCGCCTGGCCATGGAGCAGCCCGCGGCCGTCGCTTCGCGCTGGCTGCTCTGGCTGGACGGCGCGGCGACGCCGGTGTCGCTGCGTGGCCTGGCCGGCGACCTGGACTTCCTGCGCGGCCCGGGCGCCGCGCGAGTCCTGCTGGCCGAGAACTTCACGGGCTGCCTGGGCCGCGTGGCGCTCGGCGGCCACCCGCTACCCCTGGCGCGCCCGCGGCCCGGCGCGGCCCCCGGCTCCCGCGAGCCCTTCTCGGCCCGGCCCGGAGCGCCCGCCCCGCACCTCGGCTGCAGCGGCGCTCCCGTGTGTGTCCCCTCGCCCTGCCTGCACGGCGGCGCCTGCCGCGACCTCTTCGACGCCTTCGCCTGCGCCTGCGGCCCGGGCTGGGAGGGCCCGCGCTGCGAGGACCGCGCCGACCCGTGTCGCTCGGCGCCCTGCGCCCGCGGCCGCTGCCACGCACACCCAGACGGTCACTTCGAGTGCCGCTGCCCGCCTGGCTTCGCAGGCCCGCGCTGCAG
Seq C2 exon
GTTGCCTGTCCCACCAGAGGGGTGCAGCCTGAACATCACCTGTCTCAACGGTGGCCAGTGTGAGGAGGGGCCCCAGGGGGCCAACTGCAGCTGCCAGGAGAGCTTTGCTGGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391-'9-12,'9-9,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.116 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
PF0221019=Laminin_G_2=WD(100=46.9),PF0000822=EGF=WD(100=11.8),PF0000822=EGF=WD(100=12.6)
C2:
PF0000822=EGF=WD(100=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCCTGTCTCAATGGTG
R:
CTCTGCCCAGCAAAGCTCTC
Band lengths:
282-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]