MmuEX6100939 @ mm9
Exon Skipping
Gene
ENSMUSG00000035403 | Crb2
Description
crumbs homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2679260]
Coordinates
chr2:37648143-37650166:+
Coord C1 exon
chr2:37648143-37648262
Coord A exon
chr2:37648619-37649387
Coord C2 exon
chr2:37650050-37650166
Length
769 bp
Sequences
Splice sites
3' ss Seq
CAGCGGCTCTCTCTCTGCAGGTG
3' ss Score
12.05
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
TTTAGGGACTATGGATATGGGCCCCTACACCCCATTTGTTGGGTGCTAGGGATGGAACCCAAAGCCTCCTACAAGCTAGGCAGTCTACCAACCGAAGCTACTCTGCCAGCCTTACAGAAG
Seq A exon
GTGTGGCCGAGGCCACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTTCCGCACGCGCGACTCCGAGGCTGGGCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCTGCCCGCGCCCGGGCCGCGCGTGGCCGACGGCGCCTGGCATCGCGTGCGCCTAGCCCGGGAGTTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGAACTTCACGGGCTGCCTGGGCCGCGTGGCACTTGGCGACTTCCCGTTACCCTTGGCGCCACCGCGGTCTGGCACGGTGTCTGGGGCGCGCGAGCACTTCGTGGCCTGGCCCGGGTCTCCGGCCGTGAGTCTCGGCTGCCGTGGCGGACCCGTATGTTCACCCTCGCCCTGCCTGCACGGTGGCGCCTGCCGCGACCTCTTCGACGCCTTTGCTTGCTCCTGCGGCCCCGCCTGGGAAGGACCCCGCTGCGAGATCCGCGCTGACCCATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCGCTGCCCTCCGGGCTTCTCCGGCCCGCGCTGCAG
Seq C2 exon
GTTGCCTGTCCTGCCTCAGGGATGCAACCTCAACTCCACATGCAAGGATGGCGCCCCTTGTGAAGGCGGCCCCTTAGGCACCAACTGCAGTTGCCAGGAAGGTCTTGCTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035403-'9-13,'9-12,12-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0221019=Laminin_G_2=WD(100=46.3),PF0000822=EGF=WD(100=12.1),PF126612=hEGF=WD(100=5.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTATGGATATGGGCCCCT
R:
CTGAGGCCAGCAAGACCTTC
Band lengths:
232-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: