RnoEX6016654 @ rn6
Exon Skipping
Gene
ENSRNOG00000025498 | Crb2
Description
crumbs 2, cell polarity complex component [Source:RGD Symbol;Acc:1309368]
Coordinates
chr3:22054253-22056699:+
Coord C1 exon
chr3:22054253-22054418
Coord A exon
chr3:22055310-22056087
Coord C2 exon
chr3:22056583-22056699
Length
778 bp
Sequences
Splice sites
3' ss Seq
GTGGCTCTCTCTCTCTGCAGGTG
3' ss Score
13.82
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
CCCAATCCCTGTTTCAATGGTGGAACATGCCACATCACCTGGAATGACTTCTACTGCACTTGCCCTGACAACTTCACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCCCAGGCAGCCATGCCTGCCGCCTGCCACCTGTGAGGAGGTTCCAGATGGCTTTGTGT
Seq A exon
GTGTGGCCGAAGCCACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCGCGCGCTCAGCAGGGTCACCCTGGCCTTCCGCACACGCGACCTGGAGGCTGGGCTGCTGCGCGCTGCCTCTGCCGCGGGTGCCCACTCCAATATCTGGCTGGCGGTGCGCAATGGCTTGCTGGCAGTAGATGTGGCGGGCTCGGTGCTGCCGGCGCCCGGGCCGCGCGTGGCTGACGGTGCCTGGCATCGCGTGCGCCTAGCCCGGGAGTTTCCACAGGCCGCCGCCTCACGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCTTTGCACGGCTTGGGCGGCGACCTGGGTTTCCTTCAGGGCCCGGGTGCCGTGCCTCTGCTACTGGCCGAGAACTTCACGGGCTGCCTGGGCCGGGTGGCGCTCGGCGACCTCCCCTTACCCTTGGCGCCACCGCGGTCCGGCGCGATGTCTGGGGCACGCGAGCACTTCATGGCTTGGCCTGGGTCTCCGCCGGCAGTGAGCCTAGGCTGCCGGGGCGGGCCAGTATGCACGCCCTCGCCCTGCCTGCACGGCGGTGCCTGCCTCGACCTCTTCGACGTCTTTGCTTGTTCCTGCGGCCCCGCCTGGGAAGGACCCCGCTGCGAGATCCACGCTGATCCATGTCGCTCATCGCCCTGTGTCCGGGGCCAATGCAACACGCGCCCGGACGGCCGCTTCGAGTGTCGGTGCCCTCCGGGTTTCTCCGGCCCGCGCTGCAG
Seq C2 exon
GTTGCCTACCTTGCCTCAGGGGTGTAGCCTCAACTCCACCTGCAAGGATGGTGCCCCTTGTGGGGGTGGCCCCTTAGGCACTAACTGCAGTTGCCAGGAAGGCCTTGCTGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025498-'13-10,'13-9,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
PF0221019=Laminin_G_2=WD(100=45.8),PF0000822=EGF=WD(100=11.9),PF126612=hEGF=WD(100=5.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATCCCTGTTTCAATGGTGGA
R:
CCAGCAAGGCCTTCCTGG
Band lengths:
276-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]