GgaEX7009861 @ galGal4
Exon Skipping
Gene
ENSGALG00000001169 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr17:9007893-9010540:+
Coord C1 exon
chr17:9007893-9008058
Coord A exon
chr17:9008862-9009729
Coord C2 exon
chr17:9010424-9010540
Length
868 bp
Sequences
Splice sites
3' ss Seq
CACTATTCCTTTATTTATAGGTC
3' ss Score
8.7
5' ss Seq
CGAGTGGGT
5' ss Score
2.58
Exon sequences
Seq C1 exon
TCTGAACCATGTCAGAATGGTGGAAGGTGCATTGTCACGTGGAATGATTTCCATTGCAGCTGTCCAGCAAATTTCACTGGGAAGTTTTGTGAAGAGAGAGTCTGGTGTGAAAGTGACCCATGTCCTGAAGCTACCACCTGTATAGATGTTCCAGCAGGATATGTGT
Seq A exon
GTCTGGCTAACGCAACATTTAATAGTTCTGCTACCATTGAATTTACCACCAATACATCAGTGACTAGAACTCTGGGCAGCCTCCTCATGGATTTCAGAACCAGAGACGAAGACGCTGTTTTGCTTCGGGCTATGGAAGAAGTGGACTCCCTCCAGATAGCTATTAAGAACTCCTCCTTGCTTGTTGACATCAGGAGTGGGAATAGTATTGAAGGTGTCAGCTTCCTGAGTCAGAATGCTGTCACCGATGGCGCCTGGCATACAATCTCTCTGTCAATGGAGGAGCCTTCTGCACTGTCTTCCAGATGGGTGGCTCATTTGGATGGATCTATTAATATGACTCTGCAGGGAAATGCTGGGAACCTGGACTTCTTAAAGAACAACGCACTGATTGTTCTAGCTGAAAACTTCACAGGCTGCCTAGGACAAGTGAAGATAGGAGGGATCTACCTGCCATTCACCTCCCATCTCTCATATCCTCAGCCAGAACAGTTCCAGCAGTCCAGCAGAAGAACTATCCAGTTAGGCTGCACGGGGGCTGATGTTTGTGCTTCTAGCCCTTGCAGCAATGCTGGCACCTGCAGGGACTTGTTCAACTCCTTCAGCTGTGCCTGCAGTGCTGGCTGGGAGGGGCTGCTGTGCGAGTCCAATACTGATGACTGCCAGTCAAGCCCATGTGTTCATGGAAACTGCACCGATAGACTAGCAGATTTTCAGTGTGAATGCTTCCGGGGATATATTGGGAAGAAGTGTGACATCAATGTGGATGACTGTGTGCGGCACCAGTGCCAAAATGGAGCTACCTGCATTGATGGGGTTTATGGCTACTCCTGCAAGTGCCCAGCACAGTATTCAGGACCTCGCTGCGA
Seq C2 exon
ATGGCCGTTCCCACCTGAGCAGTGTGGTAAGAACTTCACCTGTCTGAATGGTGGCAAGTGTACCACTGAGACCTGGGGAGCCAACTGCACTTGCAAGCCAGGCTTCACTGGAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001169-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
PF0221019=Laminin_G_2=WD(100=40.7),PF0000822=EGF=WD(100=10.7),PF0000822=EGF=WD(100=12.8),PF0000822=EGF=WD(100=13.1)
C2:
PF126612=hEGF=PU(84.6=27.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAATGGTGGAAGGTGCA
R:
TTCCTTCCAGTGAAGCCTGGC
Band lengths:
273-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]