BtaEX6046116 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039223 | WDR38
Description
Bos taurus WD repeat domain 38 (WDR38), mRNA. [Source:RefSeq mRNA;Acc:NM_001163946]
Coordinates
chr11:95846030-95848532:+
Coord C1 exon
chr11:95846030-95846168
Coord A exon
chr11:95846743-95846863
Coord C2 exon
chr11:95848416-95848532
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTACTTTTTTTCCAGGTC
3' ss Score
11.51
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGTCAGGTCCGCAAGCCGGACCCAGCGCCCGCCTAGGAGGGAGCCCGCCAGGGCGGGCGGCCGCAGGCCCATGAACAGCAGGCCCCGAGGGAAGCTGGCCGTGGGGAGAGTGAAATTCTTCGGCCGGCACCGCGGGGAG
Seq A exon
GTCAACTCTTCAGCCTTCTCTCCCGATGGCCAGAGGCTGCTCACGGCCTCTGAGGACGGCTGTGTATATGGCTGGGAGACCCAGAGCGGGAGGCTACTGTGGAGACTGCGTGGCCACAAAG
Seq C2 exon
GCCCCGTGAGGTTCTGCCGCTTCTCCCCTGATGGCCGCCTCTTTGCCAGCACCTCCTGTGACCGCACCATCCGCCTGTGGGATGCCACAGATGCCAAGTGTCTGCAGGTCCTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039223-'0-2,'0-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(27.0=43.5)
A:
PF0040027=WD40=PD(67.6=61.0),PF0040027=WD40=PU(28.2=26.8)
C2:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGGTCCGCAAGCCG
R:
CTGCAGACACTTGGCATCTGT
Band lengths:
246-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]