RnoEX0099172 @ rn6
Exon Skipping
Gene
ENSRNOG00000014102 | Wdr38
Description
WD repeat domain 38 [Source:RGD Symbol;Acc:1562587]
Coordinates
chr3:23291764-23293203:+
Coord C1 exon
chr3:23291764-23291864
Coord A exon
chr3:23292234-23292354
Coord C2 exon
chr3:23293087-23293203
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCCCTGTACTTTCAGGTC
3' ss Score
11.16
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
AGGGAGCCCTCCCGGTTCTGGAGCGGGCTCCCATGAACATCAGAGCTCCAACAAAATTGGCCGTGGGCAGAGTGAGGTTCTACGGTCAACACCACGGGGAG
Seq A exon
GTCAACTGCTCTGCCTTCTCCCCTGATGGCCGGAACCTGATCACAGCCTCAGATGATGGTTGTGTGTATGTATGGGGGACGAAGAGTGGGCGACTGCTGTGGAGACTGGCAGGCCACAAAG
Seq C2 exon
GCCCAGTGAAGTCTTGCCGTTTCTCTCCCGATGGCCGCCTCGTTGCCAGCTCCTCCTGTGACCACACCATCCGCCTGTGGGATGTGGCAAAAGCCAAATGCCTGCATGTGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014102-'4-1,'4-0,9-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=PD(80.6=61.0),PF0040027=WD40=PU(28.2=26.8)
C2:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCCGGTTCTGGAGC
R:
TTCAGCACATGCAGGCATTTG
Band lengths:
210-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]