DreEX0085057 @ danRer10
Exon Skipping
Gene
ENSDARG00000044801 | wdr38
Description
WD repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050417-160]
Coordinates
chr21:5755614-5759031:+
Coord C1 exon
chr21:5755614-5755715
Coord A exon
chr21:5756594-5756714
Coord C2 exon
chr21:5758915-5759031
Length
121 bp
Sequences
Splice sites
3' ss Seq
CATATTTTGCCTCCCTCCAGGTG
3' ss Score
12.17
5' ss Seq
CGGGTATAG
5' ss Score
4.4
Exon sequences
Seq C1 exon
ACATCTGATTCATTATTACGATTAACAGTCATGTGGAAGAGACATCCCTCAGAGGACTTCAGCGTGGACAACATCAGATATTTCTCCAGACACAAAGGAGAG
Seq A exon
GTGAACTGCTGCGCTTTCTCTCCTGACTGTCAGCTTCTGCTCACCTGTTGTGATGCCGGCAAACTCTACCTATGGAAAACTAGCACCGCCAAACTCCTGGCCTCAGTCAGCGGACACACGG
Seq C2 exon
GTCCAGTGAAGTGCTGTGTTTTTTCCAGTGACGGTCGGCTGTTTGCGAGCGCGTCTCATGACTGCAGCGTCCGAATCTGGTGCAGCTCCAGCCTCAAATGCACACACACACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044801-'0-1,'0-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(28.9=45.8)
A:
PF0040027=WD40=PD(65.8=61.0),PF0040027=WD40=PU(28.2=26.8)
C2:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTAACAGTCATGTGGAAGAGA
R:
CTGTCAGTGTGTGTGTGCATT
Band lengths:
202-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]