BtaEX6046150 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96107928-96113401:+
Coord C1 exon
chr11:96107928-96108089
Coord A exon
chr11:96111190-96111339
Coord C2 exon
chr11:96113252-96113401
Length
150 bp
Sequences
Splice sites
3' ss Seq
CATGGGATTTATTTTTCCAGACA
3' ss Score
6.86
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATACCAGGACTTGGACTACCCCAGAGGTGACCGGCCCACCGCCATCCCCAAGAACTTTCCACACGTCATCGGCAGCCATTGGAGACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGCAGCTTCATGTGTTTGATGCAA
Seq A exon
ACACCCTGACCTGGTCACAACCAGAGACACATGGAAAACCTCCATCCCCCCGACATGGTCACGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCATGGTGGCTTGGCAGGGGACAATTTCTATGATGATCTCCATTGCATTGATATCA
Seq C2 exon
GTGACATGAAGTGGCAGAAGCTAAGGCCCACTGGGGCAGCTCCCACAGGCTGTGCTGCCCACTCAGCTGTGGCTGTGGGGAAACACCTGTATGTCTTCGGAGGAATGACTCCCACAGGAGCCCTGAATACAATGTACCAGTATCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098-'8-11,'8-9,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.333 C2=0.059
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PD(51.0=45.5)
A:
PF134181=Kelch_4=PU(68.0=66.7)
C2:
PF134181=Kelch_4=PD(30.0=29.4),PF134181=Kelch_4=PU(66.7=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTGGACTACCCCAGAGG
R:
ATACAGGTGTTTCCCCACAGC
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]