GgaEX1047817 @ galGal3
Exon Skipping
Gene
ENSGALG00000001002 | RABEPK
Description
NA
Coordinates
chr17:10311435-10312364:+
Coord C1 exon
chr17:10311435-10311597
Coord A exon
chr17:10311947-10312096
Coord C2 exon
chr17:10312215-10312364
Length
150 bp
Sequences
Splice sites
3' ss Seq
CACACGTTCCCATTTTTCAGTTG
3' ss Score
8.73
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAAATAGGAACCTGGGAGAGTCCCGAGGTGACGGGCATTCCGCCACTGCCCAGGACATTCCACACCTCCTCGGCAGCTATAGGGGACTGTCTGTATGTCTTCGGAGGGGGAGACAAAGGAGCGGAGCCGGTTAAAGACCAACAGCTTCATGTCTTTGACACAG
Seq A exon
TTGCTTTGGCATGGACCCAGCCTGACACCCATGGTGATCCGCCTTCTCCTCGGCATGGACATGTTGTAGTTGCAGTTGGGACCAAGCTTTTCATACATGGAGGTTTAGCTGGTGATATTTTTTACAATGACCTGTTCTGCATTGATACAA
Seq C2 exon
CCGACATGAAGTGGGTTAAGATAGCAGCCACTGGTGATGTGCCAGGAGGACGGGCATCCCACTCATCGGCTGTGTTTAAAGACCACTTATACATTTTTGGTGGAATAGGTCCAGATGGGACACTAGATACTACGTACAAGTATCATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001002-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.255 C2=0.000
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PU(50.9=49.1)
A:
PF134151=Kelch_3=PD(47.2=49.0),PF134151=Kelch_3=PU(48.0=47.1)
C2:
PF134151=Kelch_3=PD(50.0=49.0),PF134151=Kelch_3=PU(48.0=47.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATAGGAACCTGGGAGAGTCC
R:
TTAAACACAGCCGATGAGTGGG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]