RnoEX0073387 @ rn6
Exon Skipping
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13847032-13852342:-
Coord C1 exon
chr3:13852181-13852342
Coord A exon
chr3:13850746-13850895
Coord C2 exon
chr3:13847032-13847181
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTATGCATTTGCCTTTGTAGACA
3' ss Score
9.02
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGCCAGGACATGGAGCACACCAGAAGTGACTGGCTGCCCACCATCCCCAAGAACATTCCACACATCATCAGCAGCTATTGGAAACCACCTCTACGTCTTTGGGGGAGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGAAGTTGCATGTATTTGACGCAA
Seq A exon
ACACTCTGACGTGGGCTCAGCCAGAGACGCATGGAAGTCCTCCATCTCCCCGGCACGGCCACGCGATGGTGGCAGCAGGGACAAAACTCTTCATCCATGGAGGACTGGCAGGGGACAGGTTCTTTGATGATCTCCACTGCATTGATATTG
Seq C2 exon
GTGACATGAGCTGGCAGAAGCTTGGTCCCACCGGTACTGCCCCAGTAGGCTGTGCTGCCCATGCCGCCGTGGCTGTGGGACACCATGTGTATGTGTTTGGAGGAATGACTGCCACTGGAGCACTGAACACAATGTACAAGTACCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.346 C2=0.000
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PD(51.0=45.5),PF134151=Kelch_3=PU(50.9=49.1)
A:
PF134151=Kelch_3=PD(47.2=49.0)
C2:
PF0134420=Kelch_1=PU(77.3=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATGGAGCACACCAGAAG
R:
ATACACATGGTGTCCCACAGC
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]