BtaEX6046181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010228 | LMX1B
Description
LIM homeobox transcription factor 1, beta [Source:HGNC Symbol;Acc:HGNC:6654]
Coordinates
chr11:97477666-97478290:+
Coord C1 exon
chr11:97477666-97477847
Coord A exon
chr11:97478014-97478091
Coord C2 exon
chr11:97478224-97478290
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCCCTCTCTGGGCAGGTC
3' ss Score
12.9
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TGAAGAGCGAGGATGAGGATGGGGACATGAAGCCGGCCAAGGGACAGGGCAGCCAGAGCAAGGGCAGTGGGGACGACGGGAAGGACCCTCGGAGGCCTAAGCGGCCCCGGACCATCCTCACGACGCAGCAGCGCAGAGCCTTCAAGGCCTCCTTCGAGGTCTCCTCCAAGCCCTGCCGGAAG
Seq A exon
GTCCGAGAGACGCTGGCGGCGGAGACGGGCCTCAGCGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
Seq C2 exon
ATGAAGAAGTTGGCACGGCGGCATCAGCAGCAACAGGAGCAGCAGAACTCCCAGCGGCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010228-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.192 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=44.3)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
PF0004624=Homeobox=PD(3.5=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGGACGACGGGAAG
R:
GGAGTTCTGCTGCTCCTGTTG
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]