MmuEX6100697 @ mm10
Exon Skipping
Gene
ENSMUSG00000038765 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:MGI Symbol;Acc:MGI:1100513]
Coordinates
chr2:33566671-33567329:-
Coord C1 exon
chr2:33567148-33567329
Coord A exon
chr2:33566885-33566962
Coord C2 exon
chr2:33566671-33566737
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCTCTCCGGGTCAGGTC
3' ss Score
9.93
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGAAGAGTGAGGATGAAGATGGAGACATGAAGCCGGCCAAGGGGCAGGGCAGCCAGAGTAAAGGCAGTGGAGATGACGGGAAAGACCCGAGAAGGCCCAAACGGCCCCGAACCATCCTCACCACACAGCAGCGAAGAGCTTTCAAGGCATCCTTTGAGGTCTCCTCCAAGCCCTGTCGGAAG
Seq A exon
GTCCGAGAGACATTGGCAGCAGAGACAGGCCTCAGCGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
Seq C2 exon
ATGAAGAAGCTGGCCCGGAGACACCAGCAACAGCAGGAGCAGCAGAACTCCCAGCGGCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038765-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.208 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=44.3)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
PF0004624=Homeobox=PD(5.3=13.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGAGATGACGGGAAAG
R:
GAGTTCTGCTGCTCCTGCTG
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types