RnoEX0050290 @ rn6
Exon Skipping
Gene
ENSRNOG00000017019 | Lmx1b
Description
LIM homeobox transcription factor 1 beta [Source:RGD Symbol;Acc:620843]
Coordinates
chr3:12611722-12612391:-
Coord C1 exon
chr3:12612210-12612391
Coord A exon
chr3:12611932-12612009
Coord C2 exon
chr3:12611722-12611788
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCCCCCGGGTCAGGTC
3' ss Score
8.22
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGAAGAGTGAGGATGAAGATGGAGACATGAAGCCAGCCAAGGGGCAGGGCAGCCAGAATAAGGGCAGTGGGGATGACGGGAAGGACCCGAGAAGGCCCAAACGGCCCCGGACCATCCTCACCACACAGCAGCGAAGAGCTTTCAAGGCTTCGTTTGAGGTCTCCTCCAAGCCCTGTCGGAAG
Seq A exon
GTCCGAGAGACACTAGCCGCAGAGACAGGCCTCAGTGTGCGTGTGGTCCAGGTCTGGTTTCAGAACCAAAGAGCAAAG
Seq C2 exon
ATGAAGAAGCTGGCCCGGAGGCACCAGCAACAGCAAGAGCAGCAGAACTCCCAGCGGCTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017019-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.192 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=44.3)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
PF0004624=Homeobox=PD(3.5=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATAAGGGCAGTGGGGA
R:
GAGTTCTGCTGCTCTTGCTGT
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]