GgaEX1033605 @ galGal3
Exon Skipping
Gene
ENSGALG00000000936 | F1NDZ5_CHICK
Description
NA
Coordinates
chr17:10875143-10876773:+
Coord C1 exon
chr17:10875143-10875321
Coord A exon
chr17:10876227-10876304
Coord C2 exon
chr17:10876707-10876773
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTAAACATTTCCTCCTCTAGGTC
3' ss Score
11.7
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TTAAAAGCGATGATGAAGATGGAGATGTTAAGCCCACCAAAGGACAAGTAACACAAGGAAAAGGAAGTGATGATGGGAAGGACCCAAGGAGACCTAAACGACCAAGGACAATACTCACTACGCAGCAGAGACGAGCATTCAAAGCATCCTTTGAAGTGTCTTCCAAGCCCTGTAGGAAG
Seq A exon
GTCAGAGAAACTCTAGCAGCTGAAACAGGACTCAGTGTGCGAGTTGTCCAGGTTTGGTTTCAAAACCAAAGAGCAAAG
Seq C2 exon
ATGAAAAAACTAGCACGAAGGCACCAGCAGCAGCAGGAGCAACAAAATTCTCAGCGACTAGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000936-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.192 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(47.4=45.0)
A:
PF0004624=Homeobox=FE(43.9=100)
C2:
PF0004624=Homeobox=PD(3.5=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCAAAGGACAAGTAACA
R:
CTGGTGCCTTCGTGCTAGTTT
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]