BtaEX6046184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97969944-97971003:+
Coord C1 exon
chr11:97969944-97970036
Coord A exon
chr11:97970215-97970320
Coord C2 exon
chr11:97970912-97971003
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTTGTTCCCCTGCAGTAT
3' ss Score
8.9
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CTGTCTTCATGGACCAGGTACTGGGTCATACTCTCAGGATCCACCCTCCTGTACTACGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACAT
Seq A exon
TATAAATCCACACCTGGTAAGAAGGTCTCCGTCGTGGGCTGGATGGTGCAGCTGCCCGACGACCCTGAGCACCCGGACATATTCCAGCTGAATAACCCCGACAAAG
Seq C2 exon
GCAATGTTTACAAGTTCCAGACTGGCTCCCGGTTCCATGCAATCCTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-'34-44,'34-43,35-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.278 C2=0.016
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTTCATGGACCAGGTACT
R:
GGCCTGTTGCTTTTACATGCA
Band lengths:
181-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]