GgaEX6015666 @ galGal3
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
NA
Coordinates
chr17:11086202-11087717:+
Coord C1 exon
chr17:11086202-11086294
Coord A exon
chr17:11086473-11086578
Coord C2 exon
chr17:11087626-11087717
Length
106 bp
Sequences
Splice sites
3' ss Seq
TACTTTTCTGTCTCTTGCAGTAT
3' ss Score
10.59
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTCTTCATGGACTAGATACTGGATTATGCTTTCAGGATCGAATCTTCTGTATTTTGGAGCAAAATCTTTAAGAGGCAATGAAAGAAAACAT
Seq A exon
TATAAATCTACACCTAGTAAAAAGATCTCCATTGTGGGCTGGATGGTGGCACTGCCTGATGACCCTGAACATCCTGACATTTTCCAGCTAAATAACCCTGACAAAG
Seq C2 exon
GTAATGTTTACAAGTTCCAGACTGGTTCAAGGTTTCATGCAATATTATGGCATAAGCATTTGGATGATGCGTGCAAAAGCAACAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'16-23,'16-22,17-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.167 C2=0.032
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCATGGACTAGATACTGGA
R:
GCTTTTGCACGCATCATCCAA
Band lengths:
172-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]