RnoEX6016517 @ rn6
Exon Skipping
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12186569-12188766:-
Coord C1 exon
chr3:12188674-12188766
Coord A exon
chr3:12188410-12188515
Coord C2 exon
chr3:12186569-12186660
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGACTGTTGCTCTTTCCTAGTAT
3' ss Score
7.55
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CTGCCCTCGTGGACCAGGTACTGGGTTGTACTCTCAGGATCCACCCTCCTTTACTATGGAGCCAAGTCCTTGCGGGGCACAGACAGAAAACAT
Seq A exon
TATAAATCTACACCTGGCAAGAAGGTCTCCATCGTAGGCTGGATGGTGCAGCTGCCTGATGACCCCGAGCACCCAGACATCTTCCAGCTGAATAACCCTGACAAAG
Seq C2 exon
GCAATGTTTACAAGTTCCAGACGGGCTCCCGTTTTCATGCGATACTGTGGCACAAGCATTTGGATGATGCGTGTAAAAGCAACAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910-'36-35,'36-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.194 C2=0.032
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGTGGACCAGGTACT
R:
GAGGCCTGTTGCTTTTACACG
Band lengths:
180-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]