GgaEX6015666 @ galGal4
Exon Skipping
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10357590-10359105:+
Coord C1 exon
chr17:10357590-10357682
Coord A exon
chr17:10357861-10357966
Coord C2 exon
chr17:10359014-10359105
Length
106 bp
Sequences
Splice sites
3' ss Seq
TACTTTTCTGTCTCTTGCAGTAT
3' ss Score
10.59
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTCTCTTCATGGACTAGATACTGGATTATGCTTTCAGGATCGAATCTTCTGTATTTTGGAGCAAAATCTTTAAGAGGCAATGAAAGAAAACAT
Seq A exon
TATAAATCTACACCTAGTAAAAAGATCTCCATTGTGGGCTGGATGGTGGCACTGCCTGATGACCCTGAACATCCTGACATTTTCCAGCTAAATAACCCTGACAAAG
Seq C2 exon
GTAATGTTTACAAGTTCCAGACTGGTTCAAGGTTTCATGCAATATTATGGCATAAGCATTTGGATGATGCGTGCAAAAGCAACAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906-'26-38,'26-37,28-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.167 C2=0.016
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
PF0016924=PH=FE(31.2=100)
C2:
PF0016924=PH=PD(22.3=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCATGGACTAGATACTGGA
R:
GCTTTTGCACGCATCATCCAA
Band lengths:
172-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]