BtaEX6046267 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012735 | C9orf117
Description
chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr11:98403881-98405227:+
Coord C1 exon
chr11:98403881-98404034
Coord A exon
chr11:98404470-98404737
Coord C2 exon
chr11:98405097-98405227
Length
268 bp
Sequences
Splice sites
3' ss Seq
CCCCCACCCATCCTGCCTAGACT
3' ss Score
6.21
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
Exon sequences
Seq C1 exon
GGGGAAAGCTGGCAGCCCTGGAGGAGTTCCGGCTGCAGAAAGAGGAGCTCATGCAAAAGTTCATGTCGCTGGAGGACCAGCTGCGGAAGCAGGAGAACGAATACAAGGACTACGTGCACAACCTGGAGAAGAAGTCGGTGCTGGACAAGGACAG
Seq A exon
ACTGAGAAAGGAGATCATCCAGCGTGTGAACATGGTGGCCACGGAGTTCCGCAAGGTGGCCACGAGCCAGATGTGGGACACAACCAAGCGGGCCATCACAGAGAACAACGCGGTGACCCTGCAGTTGGCCAAGATTACACGACAGGGCACGCAGCTGCTGGCGGAGAATGAGCAGCTCCGGGGCCACCAGGACGACCTGTGCAAACAGCTGGAGCTGCTGGAGAACTCCCAGAAGCTCATGGCCAGGAAAAGCCGGGGCCACCAGAAG
Seq C2 exon
GTCATCCTCATGCTGACGGAGAAGTGCCGCGAGCAGCAGCAGGGCATGGCTGAGGCCGAGCGGCTGCGCGTCCTGCTGGGCCAGCTGGAACAGGACCTCCTGAAGCAGCAGCAGGACAATCAGGCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012735-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAAGCTGGCAGCCCT
R:
CTCAGTGCCTGATTGTCCTGC
Band lengths:
284-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]