MmuEX6100627 @ mm10
Exon Skipping
Gene
ENSMUSG00000038987 | Cfap157
Description
cilia and flagella associated protein 157 [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32779290-32780795:-
Coord C1 exon
chr2:32780642-32780795
Coord A exon
chr2:32779709-32779976
Coord C2 exon
chr2:32779290-32779420
Length
268 bp
Sequences
Splice sites
3' ss Seq
AACCCCACCCTCCTGGCAAGGCT
3' ss Score
0.36
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGATCAAGCTGAGTTCCCTGGAAGAATTCCGGCTGCAGAAAGAGGAGCTCACGGAGAAGTACTTGGCACTGGAGGAGCAGCTCCATAGGCAGGAGGGCGAGTACAAGGAATACGTGTACAACCTGGAGAAGAAGTCTGTGCTGGACAAGGACAG
Seq A exon
GCTGAGGAAAGAGATTATCCAGCGTGTGAACCTGGTGGCCACAGAGTTCCGAAAGATGGCCACCAACCAGATGTGGGAGACGACCAGGCGGGCCATCCTAGAGAACAACAGCGTGACTCTGCAGCTAAACAAGGTGTCCAAGCATGGTGTGCAGCTGCTGCAGGAGAATGAGCAGCTCAAGGGCACCCAGAACAAGCTGTGCCAACAGCTGGAGATGCTGGAGAACACCCAAGAGATCATGGCCAGAAAGAACATAGGGCATAAGAAG
Seq C2 exon
ATTATCCTCATGCTGACCGAGAAGTGCCGCCAACAGAGAAAGGGCACAGAGGAGACGGAGCAACTGCGCCTCCTGCTGTCCCAACTGGAGCAGAACTTCCAGAATGTGCAGAGGGACAACCAGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987-'7-3,'7-2,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.227
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAAGCTGAGTTCCCTGG
R:
CTCAGGGTCTGGTTGTCCC
Band lengths:
285-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types