HsaEX6063123 @ hg19
Exon Skipping
Gene
ENSG00000160401 | C9orf117
Description
chromosome 9 open reading frame 117 [Source:HGNC Symbol;Acc:27843]
Coordinates
chr9:130472960-130474209:+
Coord C1 exon
chr9:130472960-130473033
Coord A exon
chr9:130473508-130473775
Coord C2 exon
chr9:130474099-130474209
Length
268 bp
Sequences
Splice sites
3' ss Seq
CCTCCCACCTTTCTGGCCAGACT
3' ss Score
6.06
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GTGCGGAAGCAGGAGAATGAGTTCAGGGACTATGCATACAACCTGGAGAAGAAGTCGGTGCTGGACAAGGACAG
Seq A exon
ACTGAGGAAAGAGATCATCCAGCGCGTGAACCTCGTGGCCAATGAGTTCCACAAGGTGACCACGAACCGGATGTGGGAGACAACCAAGCGGGCCATCAAAGAGAACAACGGCATTACCCTGCAGATGGCCAGGGTCTCCCAGCAAGGCATGAAGCTGCTGCAGGAGAATGAGCAGCTCAAGGGAAGACAGAACAATCTGTGCAAACAGCTGGAGCTGCTGGAGAACACCCAGAAGGTCATGGCCAGGCACAAAAGAGGCCACCAGAAG
Seq C2 exon
ATCATCCTCATGCTGACTAAGAAGTGCCAGGAGCAGCAGCAGGACACCAAGGAGGCCGAGGAGCTGCGCCTCCTGCTGAGCCAGTTGGAGCAGAGATCCCTGCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCAGGAGAATGAGTTCA
R:
GCAGCTGCAGGGATCTCTG
Band lengths:
180-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)