BtaEX6046282 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013510 | TOR2A
Description
Bos taurus torsin family 2, member A (TOR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001083476]
Coordinates
chr11:98425082-98427124:-
Coord C1 exon
chr11:98426949-98427124
Coord A exon
chr11:98426160-98426287
Coord C2 exon
chr11:98425082-98425835
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCGTCCCCCGTGGTTTTAGCAA
3' ss Score
6.76
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
AAGGATCTTAAGAGCTGGGTGCAGGGGAACCTCACTGTCTGCAGCCGCTCCCTCTTTCTCTTCGATGAGATGGACAAGCTGGCCCCAGGCCTGATAGAAGTCCTGCGACCTTTCCTGGGCTCCTCCTGGGTTGTCTACGGGACCAACTATCGTAAAGCCATCTTCATCTTCATCAG
Seq A exon
CAACACCGGTGGTGAGCAGATCAACCAGGTGGTGCTGGAGGCGTGGCGCAGCCGCCGGGAACGTGAAGAGATCGGCCTGCAGGAGCTGGGGCCGGTCATCTCTCAGGCTGTGCTGGACAACCCGCACC
Seq C2 exon
ATGGCTTCTGGCGCTCGGGCATCATGGAAGAGCATCTCCTGGACGTTCTGGTGCCCTTCCTGCCACTCCAGCGGCACCACGTGCGGCACTGTGTGCTCAACGAGCTGGCCCATCTGGGCCTGGAGCCCAGGGATGAGGTGGTCCAGGCTGTGCTGGACAGCACCATCTTCTTCCCTGAGGACGAGCCGCTCTTTTCCTCCAATGGCTGCAAGATGGTGGCTTCCCGGATCGCCTTCTTCCTCTGACTCTCCCAGGTGGCATCCCTGTCGTCCTCTACCTGGCCAGGTTGTGAAGGAAAGCCCTGGACCCTCTGCCGGAGGGTCCCTGGTCCTGCAGCGTGGGACCCAGAGCATACTGTGAAGATGAGGAGGGCTGTTGGCTGGGCCGTGAGACAGAAGGCCGGAGCAGGCCCTGGCTCTTCATTGTCTGAGGGCATCTTGGCCTTTGCCTCCTTCCTCAGGGAAATCACCGGTCACCCCAGAATTTCAAGGAGCCTTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013510-'7-6,'7-4,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCCTGCGACCTTTCCTG
R:
GGGAAGAAGATGGTGCTGTCC
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]