GgaEX1059924 @ galGal3
Exon Skipping
Gene
ENSGALG00000004996 | TOR2A
Description
NA
Coordinates
chr17:5554677-5556195:+
Coord C1 exon
chr17:5554677-5554852
Coord A exon
chr17:5555205-5555332
Coord C2 exon
chr17:5555683-5556195
Length
128 bp
Sequences
Splice sites
3' ss Seq
GTTGCCTTACTCTTGTGCAGCAA
3' ss Score
6.53
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GAGAACCTGAAGCACTGGATCCAAGGGAACCTGACCAACTGCGGACGGTCGGTCTTTCTCTTTGAGGAGATGGACAAGATGCACCCGGGCCTGATTGATGTGATCATGCCATTCCTGGGACCCTCCTGGGTCGTGTATGGGACCAACTACCGCAAAGCAATCTTCATCTTCATAAG
Seq A exon
CAATGCAGGAGGAGAGCAGATCAATGAAATGACACTGGATCTCTGGCGTGCCCACCAGGACCGGGAGGAGATCAGCCTGCAGGACATGGAGGCAGCCATCTCCAAAGCGGTGTTTGAGAACCCTCAGA
Seq C2 exon
GTGGATTCTGGAGATCTGGGATCATTCACGAACATCTCATTGATTTTGTTGTGCCCTTCCTCCCACTGAAGCGCCACCACGTAAAGCAATGCGTCATCAATGAACTTGTGCAGCAAGGGCTAGAAGTACGTCACGGTGTTGTCCAGGAGGTGGCTGACAGCATCCCCTACTTCCCAGAAGAAGAGAAATTATTTTCATCAACTGGCTGCAAAACTGTAGCCTCCCGGATCAGCTTTTTCTTCTAGCCTTGCTCAGATCCATAGGGGACGTATATGGAGCTGTAAAGCTGCAGACTGGTGGGATGAGCACCAAGAGCTACATGTTACCATGCAGTAGCACAAATGCTCTCCTGCTGAACTTGTCTTTCCAGCCCTAAGGGCATTACTGCAGGATGCAACTGTGGGAGCAAGTGCAAGTGATTTGATTTAAAGCACTTAATCATTTATTCTGTGGCCAGGTGAAGGTGGGTATGCTCAGCCTGGTGCACCGCTCCAGTCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004996-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATGCCATTCCTGGGACC
R:
TCTGGGAAGTAGGGGATGCTG
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]