DreEX6014247 @ danRer10
Exon Skipping
Gene
ENSDARG00000100559 | tor2a
Description
torsin family 2, member A [Source:ZFIN;Acc:ZDB-GENE-050913-60]
Coordinates
chr5:64423484-64427513:-
Coord C1 exon
chr5:64427338-64427513
Coord A exon
chr5:64427071-64427198
Coord C2 exon
chr5:64423484-64424530
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGTTTATTTTTTCCTTCAGTTC
3' ss Score
10.6
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TCAGATCTAAAGCGACGGGTTGAGAAAAGCCTCACCGCTTGCGCTCGTTCAATCTTCATCTTTGATGAGATGGAGAAAATGCCTCCAGGTGTGATCGACGTTTTAGAACCGCATTTAGGCCCCTATCACATTCTCTTCCAGACCAACTACCGCAAGGCCATTTATATATTCATCAG
Seq A exon
TTCTGCAGGTGAGGAGATAGTGAACAGAATTGCATTAGAGAGTCGTCGGGCGGGTCGAGATCGAGAGGAAATTCAGCCTGATGAGCTGGAGGACAGTATTGCTGATGCTGTTTATAATAACAAGAACA
Seq C2 exon
GTGGGTTCTACCACTCCAGAATAATCACAGAAAAGCTTATCACTCGCTTTGTGCCTTTCCTTCCGCTGCTACGGCGCCACGTGGAGCGCTGTGCCCAGCGGGAGCTCTGCCAGCGGGGCGAGTGCCAGCGTAAAGACGTGGCATCAGCAGTAGGAGGCGCTATGAACTACACACCAAATGACAGCAAGTACTTTTCCAGCACTGGCTGCAAGTTAGTACCAGCTAAAGTAAACCTGTTCCTATGAGGCCTACAGGAAAACCTCTCTAGGATCTGAACACGAGGTGGGACAACGATAGAGCAAAGCTGAGTCAGCGTTAGATATGAGGAGACATGATGCTATTATTTGTGTGCTAATGAGTTCTGATGAAGAATCAATAATACATCCTGCTCTGGCTTGTTCAAATCGAGCAATAAGCCATTAGCTAATGGAAATGAATGAGTAAGTGTCAGTGTGTTTAACTACAATTTTACTGATTATTTATTTAATCATGGCATGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100559-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.012
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCCTCCAGGTGTGATCG
R:
TGCTGATGCCACGTCTTTACG
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]