RnoEX0092843 @ rn6
Exon Skipping
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11797686-11799693:+
Coord C1 exon
chr3:11797686-11797861
Coord A exon
chr3:11798596-11798723
Coord C2 exon
chr3:11798972-11799693
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCCTTGTGATTTTAGCAA
3' ss Score
6.88
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
AATGAGCTCAAGAGCTGGGTCCAGGGGAACCTCACTGCCTGTGGCCGGTCTCTTTTCCTCTTCGATGAGATGGACAAGCTGCCCCCTGGCCTGATGGAAGTCCTGAAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGCCATTTTCATCTTTATCAG
Seq A exon
CAATACTGGAGGTGAGCAGATCAACCAGGTGGCCCTGGAGGCATGGCGCAGCCGTAGGGACAGGGAAGAAATCAGCCTACAGGAGGTGGAGCCAGCAGTGTCCCAAGCTGTGTTGGACAACCCTCACC
Seq C2 exon
ATGGCTTCTGGCGGTCTGGCATCATGGAGGAGCAGCTGCTGGATGCTGTGGTCCCCTTCCTCCCCCTCCAGCGGCATCATGTGCGCCACTGTGTGCTCAATGAGCTGGCTCAGCTGGGTTTGGAGCCCCGAGAGGAGGTGGTTCAGGCTGTGCTGGACAGTACCACCTACTTCCCTGAGGAGGAGCAGCTCTTCTCCTCCAATGGCTGCAAGACAGTGGCATCCCGAATCACATTTTTCCTCTGAGAACCCCGGGGGCATCATTGCCTCCTCTGCCTAGACAGATCAAACAGACGCCTGGGCGTCTCCTGGAAGAATTCTTCCCTAAGCTGGCTGGCAAGTGGGACCCAGAGCACAGAGTTACGATGAAGAAAGGAGTTGGCAGGCCAAGGAAGAAAGGTCTAGAAGCATCTTTGCTGGGAAATTCCTGGGCACCCCAGAACCTCACAGCCTCGCCATTGCTCTGCGGTCTGAGCCTTCTCAATGTGAACGGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514-'8-6,'8-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PD(15.9=33.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAACTATCGCAAAGCCA
R:
AGCCATTGGAGGAGAAGAGCT
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]