BtaEX6046295 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98504232-98505752:+
Coord C1 exon
chr11:98504232-98504379
Coord A exon
chr11:98504494-98504583
Coord C2 exon
chr11:98505602-98505752
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCCCTTCCCTGCCAGATG
3' ss Score
11.86
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TGTCCCCTCTACCTGTGCCCACCACTACAAGCCCTGGAGGAAGGGGGGCCACCACTGACCCTGGGCCTGGAGGGAGAGCACCAGCGGTCCAATGCTGCCCTGGCCTTGCAGGTGGCCCGCTGCTGGCTGCAGCAGAAAGGTTACCAGG
Seq A exon
ATGCTGGGGAGCTGAAGGCATCCAGGCCCAGCCTCCCGGGGCAGCTGCCCCTGGCACCTGTGTTCCAGCCCACGCCCCGCATGCAGCAGG
Seq C2 exon
GGCTTCGGCACACGGAATGGCCAGGTCGGACGCAGTTGCTGCGGCGCGGGCCTCTTACCTGGTACCTGGACGGCGCGCACACCACCAGCAGCATGCAAGCCTGTGTGCGCTGGTTCCGCCAGGCGCTGCACCGCTGCGAGAGGCCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.645 C2=0.196
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=PD(18.4=76.0)
A:
NO
C2:
PF0287516=Mur_ligase_C=PU(75.9=86.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACCTGTGCCCACCACTA
R:
GACCTGGCCATTCCGTGTG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]