DreEX0033404 @ danRer10
Exon Skipping
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6023490-6025530:+
Coord C1 exon
chr21:6023490-6023634
Coord A exon
chr21:6023709-6023783
Coord C2 exon
chr21:6025380-6025530
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATAATCTGTTTGTTCCTCAGATC
3' ss Score
10.56
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
TGCTCGCTGTCGGTGTGTCCAGATCTGGATGAGTACGAGAGCGAGGGTTCCCTCAGCTTGGGGTTAGCTGGTCAGCATCAGCGCAGCAACGCGTCTTTGGCTCTTCAGCTCTCACACACATGGCTGCAGAGACACATCCTCACAG
Seq A exon
ATCCAGCGTCTCCAGTGGAGTTCAGCGGTGTGAGTTCAGCTCCAGCGTTTCAGCCCAGTCCTGCAATGATCAAAG
Seq C2 exon
GTCTTGCGGAGACTGAGTGGCCTGGACGCAATCAGACACTAAAACACGGTCCTGTGACCTATTACATGGATGGAGCTCATACCACACGCAGCATGCAGGCCTGTGTGCGCTGGTTCAATGAGGTCGCAACACAACACGAGAGGAACGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.077 C2=0.078
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=PD(17.5=75.5)
A:
NO
C2:
PF0287516=Mur_ligase_C=PU(50.6=86.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGAGACACATCCTCAC
R:
TTCCTCTCGTGTTGTGTTGCG
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]