RnoEX0036804 @ rn6
Exon Skipping
Gene
ENSRNOG00000050780 | Fpgs
Description
folylpolyglutamate synthase [Source:RGD Symbol;Acc:1587713]
Coordinates
chr3:11721378-11722548:-
Coord C1 exon
chr3:11722401-11722548
Coord A exon
chr3:11722232-11722321
Coord C2 exon
chr3:11721378-11721528
Length
90 bp
Sequences
Splice sites
3' ss Seq
CACAGACTCATGCCCCACAGACA
3' ss Score
5.27
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TGCCCCCTGTACCTGTGTCCACCATTGGAAGCCCTGGAGCAGGTTGGATTGCCATTGAGCCTGGGCCTGGAGGGAGAGCACCAGCGGCATAATGCAGCCTTGGCCTTGCAGCTGGCCCGTTGTTGGCTGGAGCAGCAGAACTACCATG
Seq A exon
ACATCCAGGAGCTGAAGGCATCCAAGCCAAGCATTCGGTGGCAGCTGCCGCTGGCACCTGTGTTCCGCCCCACGCCCCACATGAGACGTG
Seq C2 exon
GGCTTCGGGACACAGAGTGGCCTGGTCGGACACAGGTACTCCAGCGGGGACCTGTTACCTGGTACCTGGATGGCGCTCATACCACCAGCAGTGTGCAGGCCTGTGTGCACTGGTACTGCCAGTCACTGGAGCGCAGCAGACGCACCGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050780-'6-11,'6-9,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0287516=Mur_ligase_C=PU(53.0=86.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGATTGCCATTGAGCCTGG
R:
CGCCATCCAGGTACCAGGTAA
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]