BtaEX6046320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003388 | DPM2
Description
Bos taurus dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit (DPM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046268]
Coordinates
chr11:98614346-98615633:-
Coord C1 exon
chr11:98615610-98615633
Coord A exon
chr11:98615232-98615321
Coord C2 exon
chr11:98614346-98614448
Length
90 bp
Sequences
Splice sites
3' ss Seq
GAATCCTCCCTTTTCTGCAGGCC
3' ss Score
8.77
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
AGTACCTGAAGCGCCAGGGAAATG
Seq A exon
GCCACGGGAACAGACCAAGTGGTGGGCCTCGGCCTCGTCGCCCTTAGCCTGATCATCTTCACTTATTACACCGCCTGGGTAATTCTCTTG
Seq C2 exon
CCATTCATCGACAGTCAGCATGTCATCCACAAGTATTTCCTGCCCCGAGCCTATGCCATTGCTATCCCACTGGCCGCCGGCCTCCTGCTGCTCCTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003388-'0-2,'0-0,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139031=Claudin_2=PU(34.9=96.7),PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
C2:
PF139031=Claudin_2=FE(41.0=100),PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCGCCAGGGAAATG
R:
CACAAACAGGAGCAGCAGGAG
Band lengths:
121-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]