HsaEX0020816 @ hg38
Exon Skipping
Gene
ENSG00000136908 | DPM2
Description
dolichyl-phosphate mannosyltransferase subunit 2, regulatory [Source:HGNC Symbol;Acc:HGNC:3006]
Coordinates
chr9:127936553-127937826:-
Coord C1 exon
chr9:127937818-127937826
Coord A exon
chr9:127937434-127937523
Coord C2 exon
chr9:127936553-127936655
Length
90 bp
Sequences
Splice sites
3' ss Seq
GAGACCTCCCTTTTCTCCAGGCC
3' ss Score
7.86
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GGGGAAATG
Seq A exon
GCCACGGGGACAGACCAGGTGGTGGGACTCGGCCTCGTCGCCGTTAGCCTGATCATCTTCACCTACTACACCGCCTGGGTGATTCTCTTG
Seq C2 exon
CCATTCATCGACAGTCAGCATGTCATCCACAAGTATTTCCTGCCCCGAGCCTATGCTGTCGCCATCCCACTGGCTGCAGGCCTCCTGCTGCTCCTGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136908-'0-6,'0-1,2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
C2:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development