MmuEX0015586 @ mm9
Exon Skipping
Gene
ENSMUSG00000026810 | Dpm2
Description
dolichol-phosphate (beta-D) mannosyltransferase 2 [Source:MGI Symbol;Acc:MGI:1330238]
Coordinates
chr2:32426378-32427919:+
Coord C1 exon
chr2:32426378-32426432
Coord A exon
chr2:32426726-32426815
Coord C2 exon
chr2:32427817-32427919
Length
90 bp
Sequences
Splice sites
3' ss Seq
GAGCCTTTATTTTTCTCCAGGCC
3' ss Score
7.98
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GCCTAAACCAGGAACCGGATGTATTTTGTTGCTCCGGCGGAACGCTGGAGAGATG
Seq A exon
GCCACCGGGACAGACCAAGCAGTAGGATTTGGCCTTGTCGCCGTTAGCTTGATCATCTTCACCTACTACACCACTTGGGTGATTCTCTTG
Seq C2 exon
CCATTCATTGACAGCCAGCATGTCATCCACAAATACTTCCTGCCCCGCGCCTACGCCGTCCTCCTCCCGTTGGCCGCAGGCCTCCTGCTGCTCCTATTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026810-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF072977=DPM2=PU(33.8=90.0),PF085107=PIG-P=PU(32.5=86.7)
C2:
PF072977=DPM2=FE(42.5=100),PF085107=PIG-P=FE(42.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAACCGGATGTATTTTGT
R:
CCACAAATAGGAGCAGCAGGA
Band lengths:
152-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: